PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G046700.1
Common NamePOPTR_0014s04610g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 228aa    MW: 25966.8 Da    PI: 5.8035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G046700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19119169356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         ykGVr+++ +g+++AeIrdp++ng  +r +lg++ t+e+Aa a+++a+ k++g+
  Potri.014G046700.1 119 YKGVRRRP-WGKYAAEIRDPKKNG--ARQWLGTYETPEDAAMAYDRAAFKMRGA 169
                         9*******.***********9998..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-31118177IPR001471AP2/ERF domain
PROSITE profilePS5103223.512118176IPR001471AP2/ERF domain
SMARTSM003802.0E-37118182IPR001471AP2/ERF domain
PfamPF008474.0E-13118168IPR001471AP2/ERF domain
CDDcd000181.62E-30118178No hitNo description
SuperFamilySSF541714.38E-23118177IPR016177DNA-binding domain
PRINTSPR003675.5E-13119130IPR001471AP2/ERF domain
PRINTSPR003675.5E-13158178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MYSQAASRSD FALLESIRHH LLEDEPVPEN NNGIQARPVY CESLSFNRLF SMENWSDILL  60
QIDNSSQTMA CDTQVPESLD MQWSLWNQVD SMTTTSNYEF EVSVEDASNY LPPPKGRNYK  120
GVRRRPWGKY AAEIRDPKKN GARQWLGTYE TPEDAAMAYD RAAFKMRGAK AKLNFPHLIG  180
SSNYEPVRVT NKRYSPEPSS LSSPVSSLSE VDDESPKSKR RTYRFDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-30115181268ATERF1
2gcc_A2e-30115181268ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375127.11e-170hypothetical protein POPTR_0014s04610g
SwissprotQ8L9K12e-56ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLU5FRU21e-170U5FRU2_POPTR; Uncharacterized protein
STRINGPOPTR_0014s04610.12e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-53ethylene-responsive element binding factor 13